McAnally, William H. and Ellie R. Welp, 2002, Navigation Channel Effects on Estuarine Mean Water Level, Journal of Waterway, Port, Coastal and Ocean Engineering, 148(2). American Society of Civil Engineers.

McAnally, William H., Ashish J. Mehta, and Andrew J. Manning, 2021. Observations on Floc Settling Velocities in the Tamar Estuary, United Kingdom, Journal of Waterway, Port, Coastal and Ocean Engineering, 147(5). American Society of Civil Engineers.

W. H. McAnally; R. Kirby; S. H. Hodge; T. L. Welp; N. Greiser; P. Shrestha; D. McGowan; and P. Turnipseed, 2015, Nautical Depth for U.S. Navigable Waterways: A Review, Journal of Waterway, Port, Coastal, and Ocean Engineering, 18 Sep, 13 pp.

Camacho, René A., James L. Martin, William McAnally, Jairo Díaz-Ramirez, Hugo Rodriguez, Peter Sucsy, and Song Zhang, 2015. A Comparison of Bayesian Methods for Uncertainty Analysis in Hydraulic and Hydrodynamic Modeling. Journal of the American Water Resources Association (JAWRA) 1–22.

VanZwieten, James, William McAnally, Jameel Ahmad, Trey Davis, James Martin, Mark Bevelhimer, Allison Cribbs, Renee Lippert, Thomas Hudon, Matthew Trudeau, In-Stream Hydrokinetic Power – A Review and Appraisal, Journal of Energy Engineering. May 2014.

McAnally, William H. Christopher M. Wallen, Steven C. Sanborn, Eugene C. Maak, 2014, Composite Risk Assessment for Sacramento-San Joaquin Delta Levee System, Journal of Water Resources Planning and Management, Vol. 140, No. 5, May 1. American Society of Civil Engineers.

Diaz-Ramirez, J., Johnson, B. M., McAnally, W. H., Martin, J., Alarcon, V. J., & Camacho, R. A. 2013. Estimation and Propagation of Parameter Uncertainty in Lumped Hydrological Models: A Case Study of HSPF Model Applied to Luxapallila Creek Watershed in Southeast USA.. Journal of Hydrogeology & Hydrologic Engineering. 2(1), 1-9.

Xiong, Y., Alarcon, V. J., Martin, J., & McAnally, W. H. (2012). SEDDEER: A Sediment Transport Model for Water Quality Modeling. Transactions of the ASABE. American Society of Agricultural and Biological Engineers. 55(6), 2147-2161.

Xiong, Y., Alarcon, V. J., Martin, J., & McAnally, W. H. (2012). WASP_SEDDEER: Incorporation of SEDDEER into WASP. Energy and Environment Research. Canadian Center of Science and Education. 2(1), 157-181. DOI:10.5539/eer.v2n1p157.

Alarcon, V. J., & McAnally, W. H. (2012). A Strategy for Estimating Nutrient Concentrations using Remote Sensing Datasets and Hydrological Modeling. International Journal of Agricultural and Environmental Information Systems. 3(1), 1-13.

Diaz-Ramirez, J. N., W. H. McAnally, J. L. Martin, 2012, Analysis of Hydrological Processes Applying the HSPF Model in Selected Watersheds in Alabama, Mississippi, and Puerto Rico. Applied Engineering in Agriculture. Vol. 27(6).

Aleithawe, Imad, R. Ralph Sinno, and William H. McAnally, 2012, Right of Way Acquisition Duration Prediction Model for Highway Construction Projects, Journal of Construction Engineering and Management, American Society of Civil Engineers, April, Vol 138, No. 4. 540-544

Alarcon, V. J., McAnally, W. H., & Pathak, S. (2012). Comparison of Two Hydrodynamic Models of Weeks Bay, Alabama. In B. Murgante , O. Gervasi , S. Misra , N. Nedjah , A. M. A. C. Rocha , D. Taniar and B. O. Apduhan (Eds.), Lecture Notes in Computer Science. ICCSA 2012: Springer-Verlag. 7334, 589-598.

Alarcon, V. J., & McAnally, W. H. (2012). Using Hydrodynamic Modeling for Estimating Flooding and Water Depths in Grand Bay, Alabama. In B. Murgante , O. Gervasi , S. Misra , N. Nedjah , A. M. A. C. Rocha , D. Taniar and B. O. Apduhan (Eds.), Lecture Notes in Computer Science. ICCSA 2012: Springer-Verlag. 7334, 578-588.

Sharp, Jeremy A. and William H. McAnally, 2011. Sediment Budget Template applied to Aberdeen Pool, World Review of Science, Technology and Sustainable Development, Volume 8 - Issue 2/3/4.

Sharp, Jeremy A. and William H. McAnally, 2011, Numerical modeling of surge overtopping of a levee, Applied Mathematical Modelling, Sep.

Wayne Wilkerson, William H. McAnally, James L. Martin, Jeffrey A. Ballweber, Kim Collins Pevey, Jairo Diaz-Ramirez, and Austin Moore, 2010, Latis: A Spatial Decision Support System to Assess Low Impact Site Development Strategies. Advances in Civil Engineering, Volume 2010 (2010), Article ID 810402.

Duan, Zhiyong, James L. Martin, William H McAnally and Richard L. Stockstill, 2009, Combined Effects of Wind and Stream on Gas-Liquid Transfer Rate, Journal of Environmental Engineering, American Society of Civil Engineers, Vol. 135, No. 8.

Diaz-Ramirez, J.N., Z. Duan, W.H. McAnally, and J.L. Martin, 2008. Sensitivity of the HSPF Model to Land Use/Land Cover Datasets. Journal of Coastal Research: Special Issue 52: Surface Water Modeling and Analysis. 89-94.

Diaz-Ramirez, J. N., L. R. Perez-Alegria, W. H. McAnally, 2008, Hydrology and Sediment Modeling Using BASINS/HSPF in a Tropical Island Watershed, Transactions, Vol. 51(4) American Society of Agricultural and Biological Engineers.

Duan, Z., J. N. Diaz, J. L. Martin, William H. McAnally, 2008, Influence of Land Use/Land Cover Change on Saint Louis Bay Watershed Modeling, Journal of Coastal Research, Special Issue 52.

Duan, Z., Martin, J., Stockstill, R., McAnally, W. and Bridges, D., 2008, Stream-driven Gas-liquid Transfer Rate Modeling, Environmental Engineering Science.

Diaz-Ramirez, J.N., V.J. Alarcon, Z. Duan, M.L. Tagert, W. H. McAnally, J. L. Martin, and C.G. O’Hara. 2007. Impacts of Land Use Characterization in Modeling Hydrology and Sediments for the Luxapallila Creek Watershed, Alabama/Mississippi, Transactions, American Society of Agricultural and Biological Engineers, 51(1): 139-151.

Mancilla, C. A., McAnally, W. H., and Stockstill, R. L. 2007, Hydrodynamic Loadings on a floating guardwall at a navigation lock, Canadian Journal of Civil Engineering, Sep, National Research Council, pp 1069-1074

McAnally, W. H., Friedrichs, C., Hamilton, D., Hayter, E. Shrestha, P., Rodriguez, H., Sheremet, A., Teeter, A. and Schoellhamer, D. 2007, Management of Fluid Mud in Estuaries, Bays, and Lakes, Part 2: Measurement, Modeling, and Management, January, Journal of Hydraulic Engineering, Jan. ASCE.

McAnally, W. H., Friedrichs, C., Hamilton, D., Hayter, E. Shrestha, P., Rodriguez, H., Sheremet, A., and Teeter, A. 2007, Management of Fluid Mud in Estuaries, Bays, and Lakes, Part 1: Present State of Understanding on Character and Behavior, January, Journal of Hydraulic Engineering, Jan. ASCE.

McAnally, W. H. and Haydel, J. F., 2005, Port Sedimentation Solutions, International Journal of Civil and Environmental Engineering. March.

McAnally, W. H. and Mehta, A. J., Significance of Aggregation of Fine Sediment Particles in Their Deposition, Estuarine, Coastal, and Marine Science, May 2002. pp 643-656.

Parchure, T. M., McAnally, W. H., and Teeter, A. M., Desktop Method for Estimating Vessel-Induced Sediment Suspension, Journal of Hydraulic Engineering, July 2001, American Society of Civil Engineers, New York. Pp 577-587.

McAnally, W. H. and Mehta, A. J., Aggregation Rate of Fine Sediment, Journal of Hydraulic Engineering, December 2000, American Society of Civil Engineers, New York. Pp 883-892.

McAnally, W. H. and Pritchard, D. P., Salinity Control in the Mississippi River Under Drought Flows, Journal of Waterway, Port, Coastal, and Ocean Engineering, Jan 1997, American Society of Civil Engineers, New York. pp 34-40.

Task Committee, Cohesive Sediment Transport II: Application, Journal of Hydraulic Engineering, ASCE, Vol 115, No. 8, August 1989. (one of 7 authors) pp1094-1112.

McAnally, W. H. and Adamec, S. A., Designing Open Water Disposal for Dredged Muddy Sediments, Continental Shelf Research, Vol 7, nos 11/12, September 1987, Pergamon Press, Oxford, England. pp 1445-1456.

McAnally, et al., Application of the Hybrid Modeling System, Journal of the Hydraulics Division, May 1984, American Society of Civil Engineers, New York (primary author of 4). pp 627-642.

McAnally, W. H. J. V. Letter, J. P. Stewart, W, A, Thomas, and N. J. Brogdon, 1984. The Columbia Hybrid Modeling System, Journal of the Hydraulics Division, Mar, American Society of Civil Engineers, New York. pp 300-311.

Task Committee, Causes of Navigation Channel Shoaling, Journal of the Waterways, Port & Coastal Division, Sept 1983, American Society of Civil Engineers, New York (one of 5 authors). pp 199-220.